2018

Heterologous Expression of Pseudomonas putida Methyl-Accepting Chemotaxis Proteins Yields Escherichia coli Cells Chemotactic to Aromatic Compounds.

Roggo C, Clerc EE, Hadadi N, Carraro N, Stocker R, van der Meer JR.

Appl Environ Microbiol. 2018 Sep 15. 10.1128/AEM.01362-18

Host diet mediates a negative relationship between abundance and diversity of Drosophila gut microbiota.

Erkosar B, Yashiro E, Zajitschek F, Friberg U, Maklakov AA, van der Meer JR, Kawecki TJ.

Ecol Evol. 2018 Sep. 10.1002/ece3.4444

Bacterial bioreporter detection of arsenic associated with iron oxides.

van Genuchten CM, Finger A, van der Meer JR, Peña J.

Environ Sci Process Impacts. 2018 Jun 20. 10.1039/c8em00071a

Prospects for harnessing biocide resistance for bioremediation and detoxification.

Atashgahi S, Sánchez-Andrea I, Heipieper HJ, van der Meer JR, Stams AJM, Smidt H.

Science. 2018 May 18. 10.1126/science.aar3778

Meta-scale mountain grassland observatories uncover commonalities as well as specific interactions among plant and non-rhizosphere soil bacterial communities.

Yashiro E, Pinto-Figueroa E, Buri A, Spangenberg JE, Adatte T, Niculita-Hirzel H, Guisan A, van der Meer JR.

Sci Rep. 2018 Apr 10. 10.1038/s41598-018-24253-x

Physiological and transcriptome changes induced by Pseudomonas putida acquisition of an integrative and conjugative element.

Miyazaki R, Yano H, Sentchilo V, van der Meer JR.

Sci Rep. 2018 Apr 3. 10.1038/s41598-018-23858-6

Quantitative chemical biosensing by bacterial chemotaxis in microfluidic chips.

Roggo C, Picioreanu C, Richard X, Mazza C, van Lintel H, van der Meer JR.

Environ Microbiol. 2018 Jan. 10.1111/1462-2920.13982

2017

Adaptation to Chronic Nutritional Stress Leads to Reduced Dependence on Microbiota in Drosophila melanogaster.

Erkosar B, Kolly S, van der Meer JR, Kawecki TJ.

MBio. 2017 Oct 24. 10.1128/mBio.01496-17

Complete alanine scanning of the Escherichia coli RbsB ribose binding protein reveals residues important for chemoreceptor signaling and periplasmic abundance.

Reimer A, Maffenbeier V, Dubey M, Sentchilo V, Tavares D, Gil MH, Beggah S, van der Meer JR.

Sci Rep. 2017 Aug 15. 10.1038/s41598-017-08035-5

The hidden life of integrative and conjugative elements.

Delavat F, Miyazaki R, Carraro N, Pradervand N, van der Meer JR.

FEMS Microbiol Rev. 2017 Jul 1. 10.1093/femsre/fux008

Editorial overview: Environmental biotechnology.

van der Meer JR, Gu MB.

Curr Opin Biotechnol. 2017 Jun. 10.1016/j.copbio.2017.05.001

Miniaturized and integrated whole cell living bacterial sensors in field applicable autonomous devices.

Roggo C, van der Meer JR.

Curr Opin Biotechnol. 2017 Jun. 10.1016/j.copbio.2016.11.023

Draft Genome Sequence of Microbacterium foliorum Strain 122 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site.

Lumactud R, Fulthorpe R, Sentchilo V, van der Meer JR.

Genome Announc. 2017 May 25. 10.1128/genomeA.00434-17

Mechanistic Modeling of Genetic Circuits for ArsR Arsenic Regulation.

Berset Y, Merulla D, Joublin A, Hatzimanikatis V, van der Meer JR.

ACS Synth Biol. 2017 May 19. 10.1021/acssynbio.6b00364

Draft Genome Sequence of Plantibacterflavus Strain 251 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site.

Lumactud R, Fulthorpe R, Sentchilo V, van der Meer JR.

Genome Announc. 2017 Apr 27. 10.1128/genomeA.00276-17

2016

Local Environmental Factors Drive Divergent Grassland Soil Bacterial Communities in the Western Swiss Alps.

Yashiro E, Pinto-Figueroa E, Buri A, Spangenberg JE, Adatte T, Niculita-Hirzel H, Guisan A, van der Meer JR.

Appl Environ Microbiol. 2016 Nov 1. 10.1128/AEM.01170-16

Challenges in microbial ecology: building predictive understanding of community function and dynamics.

Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H, Isaac Newton Institute Fellows., Soyer OS.

ISME J. 2016 Nov. 10.1038/ismej.2016.45

Towards improved biomonitoring tools for an intensified sustainable multi-use environment.

van der Meer JR.

Microb Biotechnol. 2016 Sep. 10.1111/1751-7915.12395

Highly variable individual donor cell fates characterize robust horizontal gene transfer of an integrative and conjugative element.

Delavat F, Mitri S, Pelet S, van der Meer JR.

Proc Natl Acad Sci U S A. 2016 Jun 14. 10.1073/pnas.1604479113

An automated microreactor for semi-continuous biosensor measurements.

Buffi N, Beggah S, Truffer F, Geiser M, van Lintel H, Renaud P, van der Meer JR.

Lab Chip. 2016 Apr 21. 10.1039/c6lc00119j

Immediate ecotoxicological effects of short-lived oil spills on marine biota.

Brussaard CP, Peperzak L, Beggah S, Wick LY, Wuerz B, Weber J, Samuel Arey J, van der Burg B, Jonas A, Huisman J, van der Meer JR.

Nat Commun. 2016 Apr 4. 10.1038/ncomms11206

Comparison of differential gene expression to water stress among bacteria with relevant pollutant-degradation properties.

Moreno-Forero SK, Rojas E, Beggah S, van der Meer JR.

Environ Microbiol Rep. 2016 Feb. 10.1111/1758-2229.12356

The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand.

Morales M, Sentchilo V, Bertelli C, Komljenovic A, Kryuchkova-Mostacci N, Bourdilloud A, Linke B, Goesmann A, Harshman K, Segers F, Delapierre F, Fiorucci D, Seppey M, Trofimenco E, Berra P, El Taher A, Loiseau C, Roggero D, Sulfiotti M, Etienne A, Ruiz Buendia G, Pillard L, Escoriza A, Moritz R, Schneider C, Alfonso E, Ben Jeddou F, Selmoni O, Resch G, Greub G, Emery O, Dubey M, Pillonel T, Robinson-Rechavi M, van der Meer JR.

PLoS One. 2016. 10.1371/journal.pone.0165850

2015

Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea.

Chronopoulou PM, Sanni GO, Silas-Olu DI, van der Meer JR, Timmis KN, Brussaard CP, McGenity TJ.

Microb Biotechnol. 2015 May. 10.1111/1751-7915.12176

Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights.

Bertelli C, Aeby S, Chassot B, Clulow J, Hilfiker O, Rappo S, Ritzmann S, Schumacher P, Terrettaz C, Benaglio P, Falquet L, Farinelli L, Gharib WH, Goesmann A, Harshman K, Linke B, Miyazaki R, Rivolta C, Robinson-Rechavi M, van der Meer JR, Greub G.

Front Microbiol. 2015. 10.3389/fmicb.2015.00101

Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds.

Miyazaki R, Bertelli C, Benaglio P, Canton J, De Coi N, Gharib WH, Gjoksi B, Goesmann A, Greub G, Harshman K, Linke B, Mikulic J, Mueller L, Nicolas D, Robinson-Rechavi M, Rivolta C, Roggo C, Roy S, Sentchilo V, Siebenthal AV, Falquet L, van der Meer JR.

Environ Microbiol. 2015 Jan. 10.1111/1462-2920.12498

2014

The TetR-type MfsR protein of the integrative and conjugative element (ICE) ICEclc controls both a putative efflux system and initiation of ICE transfer.

Pradervand N, Delavat F, Sulser S, Miyazaki R, van der Meer JR.

J Bacteriol. 2014 Nov. 10.1128/JB.02129-14

First day of an oil spill on the open sea: early mass transfers of hydrocarbons to air and water.

Gros J, Nabi D, Würz B, Wick LY, Brussaard CP, Huisman J, van der Meer JR, Reddy CM, Arey JS.

Environ Sci Technol. 2014 Aug 19. 10.1021/es502437e

Escherichia [corrected] coli ribose binding protein based bioreporters revisited.

Reimer A, Yagur-Kroll S, Belkin S, Roy S, van der Meer JR.

Sci Rep. 2014 Jul 9. 10.1038/srep05626

Transcriptional profiling of Gram-positive Arthrobacter in the phyllosphere: induction of pollutant degradation genes by natural plant phenolic compounds.

Scheublin TR, Deusch S, Moreno-Forero SK, Müller JA, van der Meer JR, Leveau JH.

Environ Microbiol. 2014 Jul. 10.1111/1462-2920.12375

An operon of three transcriptional regulators controls horizontal gene transfer of the integrative and conjugative element ICEclc in Pseudomonas knackmussii B13.

Pradervand N, Sulser S, Delavat F, Miyazaki R, Lamas I, van der Meer JR.

PLoS Genet. 2014 Jun. 10.1371/journal.pgen.1004441

Identification of opsA, a gene involved in solute stress mitigation and survival in soil, in the polycyclic aromatic hydrocarbon-degrading bacterium Novosphingobium sp. strain LH128.

Fida TT, Breugelmans P, Lavigne R, van der Meer JR, De Mot R, Vaysse PJ, Springael D.

Appl Environ Microbiol. 2014 Jun. 10.1128/AEM.00306-14

Compact portable biosensor for arsenic detection in aqueous samples with Escherichia coli bioreporter cells.

Truffer F, Buffi N, Merulla D, Beggah S, van Lintel H, Renaud P, van der Meer JR, Geiser M.

Rev Sci Instrum. 2014 Jan. 10.1063/1.4863333

2013

Genome-wide transposon insertion scanning of environmental survival functions in the polycyclic aromatic hydrocarbon degrading bacterium Sphingomonas wittichii RW1.

Roggo C, Coronado E, Moreno-Forero SK, Harshman K, Weber J, van der Meer JR.

Environ Microbiol. 2013 Oct. 10.1111/1462-2920.12125

Electrochemical As(III) whole-cell based biochip sensor.

Cortés-Salazar F, Beggah S, van der Meer JR, Girault HH.

Biosens Bioelectron. 2013 Sep 15. 10.1016/j.bios.2013.03.011

Tunable reporter signal production in feedback-uncoupled arsenic bioreporters.

Merulla D, Hatzimanikatis V, van der Meer JR.

Microb Biotechnol. 2013 Sep. 10.1111/1751-7915.12031

Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria.

Schamfuß S, Neu TR, van der Meer JR, Tecon R, Harms H, Wick LY.

Environ Sci Technol. 2013 Jul 2. 10.1021/es304378d

A new large-DNA-fragment delivery system based on integrase activity from an integrative and conjugative element.

Miyazaki R, van der Meer JR.

Appl Environ Microbiol. 2013 Jul. 10.1128/AEM.00711-13

Community-wide plasmid gene mobilization and selection.

Sentchilo V, Mayer AP, Guy L, Miyazaki R, Green Tringe S, Barry K, Malfatti S, Goessmann A, Robinson-Rechavi M, van der Meer JR.

ISME J. 2013 Jun. 10.1038/ismej.2013.13

Bioreporters and biosensors for arsenic detection. Biotechnological solutions for a world-wide pollution problem.

Merulla D, Buffi N, Beggah S, Truffer F, Geiser M, Renaud P, van der Meer JR.

Curr Opin Biotechnol. 2013 Jun. 10.1016/j.copbio.2012.09.002

Examining chemical compound biodegradation at low concentrations through bacterial cell proliferation.

Czechowska K, Sentchilo V, Beggah S, Rey S, Seyfried M, van der Meer JR.

Environ Sci Technol. 2013 Feb 19. 10.1021/es303592c

Cell differentiation to "mating bodies" induced by an integrating and conjugative element in free-living bacteria.

Reinhard F, Miyazaki R, Pradervand N, van der Meer JR.

Curr Biol. 2013 Feb 4. 10.1016/j.cub.2012.12.025

Improved statistical analysis of low abundance phenomena in bimodal bacterial populations.

Reinhard F, van der Meer JR.

PLoS One. 2013. 10.1371/journal.pone.0078288

Characterization of a MexAB-OprM efflux system necessary for productive metabolism of Pseudomonas azelaica HBP1 on 2-hydroxybiphenyl.

Czechowska K, Reimmann C, van der Meer JR.

Front Microbiol. 2013. 10.3389/fmicb.2013.00203

2012

Exposure to solute stress affects genome-wide expression but not the polycyclic aromatic hydrocarbon-degrading activity of Sphingomonas sp. strain LH128 in biofilms.

Fida TT, Breugelmans P, Lavigne R, Coronado E, Johnson DR, van der Meer JR, Mayer AP, Heipieper HJ, Hofkens J, Springael D.

Appl Environ Microbiol. 2012 Dec. 10.1128/AEM.02516-12

Field testing of arsenic in groundwater samples of Bangladesh using a test kit based on lyophilized bioreporter bacteria.

Siegfried K, Endes C, Bhuiyan AF, Kuppardt A, Mattusch J, van der Meer JR, Chatzinotas A, Harms H.

Environ Sci Technol. 2012 Mar 20. 10.1021/es203511k

Genome-Wide Analysis of Salicylate and Dibenzofuran Metabolism in Sphingomonas Wittichii RW1.

Coronado E, Roggo C, Johnson DR, van der Meer JR.

Front Microbiol. 2012. 10.3389/fmicb.2012.00300

Cellular variability of RpoS expression underlies subpopulation activation of an integrative and conjugative element.

Miyazaki R, Minoia M, Pradervand N, Sulser S, Reinhard F, van der Meer JR.

PLoS Genet. 2012. 10.1371/journal.pgen.1002818

2011

Transcriptome and membrane fatty acid analyses reveal different strategies for responding to permeating and non-permeating solutes in the bacterium Sphingomonas wittichii.

Johnson DR, Coronado E, Moreno-Forero SK, Heipieper HJ, van der Meer JR.

BMC Microbiol. 2011 Nov 14. 10.1186/1471-2180-11-250

Miniaturized bacterial biosensor system for arsenic detection holds great promise for making integrated measurement device.

Buffi N, Merulla D, Beutier J, Barbaud F, Beggah S, van Lintel H, Renaud P, van der Meer JR.

Bioeng Bugs. 2011 Sep-Oct. 10.4161/bbug.2.5.17236

Development of bioreporter assays for the detection of bioavailability of long-chain alkanes based on the marine bacterium Alcanivorax borkumensis strain SK2.

Kumari R, Tecon R, Beggah S, Rutler R, Arey JS, van der Meer JR.

Environ Microbiol. 2011 Oct. 10.1111/j.1462-2920.2011.02552.x

Development of a microfluidics biosensor for agarose-bead immobilized Escherichia coli bioreporter cells for arsenite detection in aqueous samples.

Buffi N, Merulla D, Beutier J, Barbaud F, Beggah S, van Lintel H, Renaud P, van der Meer JR.

Lab Chip. 2011 Jul 21. 10.1039/c1lc20274j

A flow cytometry based oligotrophic pollutant exposure test to detect bacterial growth inhibition and cell injury.

Czechowska K, van der Meer JR.

Environ Sci Technol. 2011 Jul 1. 10.1021/es200591v

How can a dual oriT system contribute to efficient transfer of an integrative and conjugative element?

Miyazaki R, van der Meer JR.

Mob Genet Elements. 2011 May. 10.4161/mge.1.1.15744

Characterisation of the putative effector interaction site of the regulatory HbpR protein from Pseudomonas azelaica by site-directed mutagenesis.

Vogne C, Bisht H, Arias S, Fraile S, Lal R, van der Meer JR.

PLoS One. 2011 Feb 17. 10.1371/journal.pone.0016539

A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13.

Miyazaki R, van der Meer JR.

Mol Microbiol. 2011 Feb. 10.1111/j.1365-2958.2010.07484.x

Transcriptomic analysis of phenanthrene degrading Sphingomonas biofilms exposed to environmentally relevant solute and matric stresses.

Fida TT, Breugelmans P, Lavigne R, Coronado E, Johnson D, Van Der Meer JR, Mayer A, Hofkens J, Springael D.

Commun Agric Appl Biol Sci. 2011.

2010

Where microbiology meets microengineering: design and applications of reporter bacteria.

van der Meer JR, Belkin S.

Nat Rev Microbiol. 2010 Jul. 10.1038/nrmicro2392

Let the sun shine.

van der Meer JR.

Curr Opin Biotechnol. 2010 Jun. 10.1016/j.copbio.2010.04.003

Characterisation of microbial communities colonising the hyphal surfaces of arbuscular mycorrhizal fungi.

Scheublin TR, Sanders IR, Keel C, van der Meer JR.

ISME J. 2010 Jun. 10.1038/ismej.2010.5

Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13.

Gaillard M, Pradervand N, Minoia M, Sentchilo V, Johnson DR, van der Meer JR.

BMC Microbiol. 2010 May 26. 10.1186/1471-2180-10-153

Development of a multistrain bacterial bioreporter platform for the monitoring of hydrocarbon contaminants in marine environments.

Tecon R, Beggah S, Czechowska K, Sentchilo V, Chronopoulou PM, McGenity TJ, van der Meer JR.

Environ Sci Technol. 2010 Feb 1. 10.1021/es902849w

2009

Double-tagged fluorescent bacterial bioreporter for the study of polycyclic aromatic hydrocarbon diffusion and bioavailability.

Tecon R, Binggeli O, van der Meer JR.

Environ Microbiol. 2009 Sep. 10.1111/j.1462-2920.2009.01952.x

Unlike PAHs from Exxon Valdez crude oil, PAHs from Gulf of Alaska coals are not readily bioavailable.

Deepthike HU, Tecon R, Van Kooten G, Van der Meer JR, Harms H, Wells M, Short J.

Environ Sci Technol. 2009 Aug 1.

Toxicity of triclosan, penconazole and metalaxyl on Caulobacter crescentus and a freshwater microbial community as assessed by flow cytometry.

Johnson DR, Czechowska K, Chèvre N, van der Meer JR.

Environ Microbiol. 2009 Jul. 10.1111/j.1462-2920.2009.01893.x

Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13.

Sentchilo V, Czechowska K, Pradervand N, Minoia M, Miyazaki R, van der Meer JR.

Mol Microbiol. 2009 Jun. 10.1111/j.1365-2958.2009.06726.x

Development of bacteria-based bioassays for arsenic detection in natural waters.

Diesel E, Schreiber M, van der Meer JR.

Anal Bioanal Chem. 2009 Jun. 10.1007/s00216-009-2785-x

Bioremediation, a broad perspective.

van Dillewijn P, Nojiri H, Van der Meer JR, Wood TK.

Microb Biotechnol. 2009 Mar. 10.1111/j.1751-7915.2009.00091.x

Optimization of preservation conditions of As (III) bioreporter bacteria.

Kuppardt A, Chatzinotas A, Breuer U, van der Meer JR, Harms H.

Appl Microbiol Biotechnol. 2009 Mar. 10.1007/s00253-009-1888-9

Genomic islands: tools of bacterial horizontal gene transfer and evolution.

Juhas M, van der Meer JR, Gaillard M, Harding RM, Hood DW, Crook DW.

FEMS Microbiol Rev. 2009 Mar. 10.1111/j.1574-6976.2008.00136.x

Novel use of a whole cell E. coli bioreporter as a urinary exposure biomarker.

Lewis C, Beggah S, Pook C, Guitart C, Redshaw C, van der Meer JR, Readman JW, Galloway T.

Environ Sci Technol. 2009 Jan 15.

2008

Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas.

Minoia M, Gaillard M, Reinhard F, Stojanov M, Sentchilo V, van der Meer JR.

Proc Natl Acad Sci U S A. 2008 Dec 30. 10.1073/pnas.0806164106

Comparison of naphthalene bioavailability determined by whole-cell biosensing and availability determined by extraction with Tenax.

Kohlmeier S, Mancuso M, Deepthike U, Tecon R, van der Meer JR, Harms H, Wells M.

Environ Pollut. 2008 Dec. 10.1016/j.envpol.2008.06.001

Bacterial Biosensors for Measuring Availability of Environmental Pollutants.

Tecon R, Van der Meer JR.

Sensors (Basel). 2008 Jul 10. 10.3390/s8074062

Use of flow cytometric methods for single-cell analysis in environmental microbiology.

Czechowska K, Johnson DR, van der Meer JR.

Curr Opin Microbiol. 2008 Jun. 10.1016/j.mib.2008.04.006

Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1.

Gaillard M, Pernet N, Vogne C, Hagenbüchle O, van der Meer JR.

Proc Natl Acad Sci U S A. 2008 May 13. 10.1073/pnas.0801269105

Internal arsenite bioassay calibration using multiple bioreporter cell lines.

Wackwitz A, Harms H, Chatzinotas A, Breuer U, Vogne C, Van Der Meer JR.

Microb Biotechnol. 2008 Mar. 10.1111/j.1751-7915.2007.00011.x

Burkholderia sartisoli sp. nov., isolated from a polycyclic aromatic hydrocarbon-contaminated soil.

Vanlaere E, van der Meer JR, Falsen E, Salles JF, de Brandt E, Vandamme P.

Int J Syst Evol Microbiol. 2008 Feb. 10.1099/ijs.0.65451-0

Enhanced biodegradation of hexachlorocyclohexane (HCH) in contaminated soils via inoculation with Sphingobium indicum B90A.

Raina V, Suar M, Singh A, Prakash O, Dadhwal M, Gupta SK, Dogra C, Lawlor K, Lal S, van der Meer JR, Holliger C, Lal R.

Biodegradation. 2008 Feb. 10.1007/s10532-007-9112-z

Mutant HbpR transcription activator isolation for 2-chlorobiphenyl via green fluorescent protein-based flow cytometry and cell sorting.

Beggah S, Vogne C, Zenaro E, Van Der Meer JR.

Microb Biotechnol. 2008 Jan. 10.1111/j.1751-7915.2007.00008.x

2007

Analysis of bioavailable arsenic in rice with whole cell living bioreporter bacteria.

Baumann B, van der Meer JR.

J Agric Food Chem. 2007 Mar 21. 10.1021/jf0631676

Bioreporters: gfp versus lux revisited and single-cell response.

Kohlmeier S, Mancuso M, Tecon R, Harms H, van der Meer JR, Wells M.

Biosens Bioelectron. 2007 Mar 15. 10.1016/j.bios.2006.07.005

2006

Purification and characterization of two enantioselective alpha-ketoglutarate-dependent dioxygenases, RdpA and SdpA, from Sphingomonas herbicidovorans MH.

Müller TA, Fleischmann T, van der Meer JR, Kohler HP.

Appl Environ Microbiol. 2006 Jul. 10.1128/AEM.02758-05

Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation.

Paul D, Pandey G, Meier C, van der Meer JR, Jain RK.

FEMS Microbiol Ecol. 2006 Jul. 10.1111/j.1574-6941.2006.00103.x

A new green fluorescent protein-based bacterial biosensor for analysing phenanthrene fluxes.

Tecon R, Wells M, van der Meer JR.

Environ Microbiol. 2006 Apr. 10.1111/j.1462-2920.2005.00948.x

Whole-cell living biosensors--are they ready for environmental application?

Harms H, Wells MC, van der Meer JR.

Appl Microbiol Biotechnol. 2006 Apr. 10.1007/s00253-006-0319-4

The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties.

Gaillard M, Vallaeys T, Vorhölter FJ, Minoia M, Werlen C, Sentchilo V, Pühler A, van der Meer JR.

J Bacteriol. 2006 Mar. 10.1128/JB.188.5.1999-2013.2006

Analytics with engineered bacterial bioreporter strains and systems.

van der Meer JR.

Curr Opin Biotechnol. 2006 Feb. 10.1016/j.copbio.2006.01.005

Information from single-cell bacterial biosensors: what is it good for?

Tecon R, van der Meer JR.

Curr Opin Biotechnol. 2006 Feb. 10.1016/j.copbio.2005.11.001

2005

Enantioselective transformation of alpha-hexachlorocyclohexane by the dehydrochlorinases LinA1 and LinA2 from the soil bacterium Sphingomonas paucimobilis B90A.

Suar M, Hauser A, Poiger T, Buser HR, Müller MD, Dogra C, Raina V, Holliger C, van der Meer JR, Lal R, Kohler HP.

Appl Environ Microbiol. 2005 Dec. 10.1128/AEM.71.12.8514-8518.2005

Bacterial bioassay for rapid and accurate analysis of arsenic in highly variable groundwater samples.

Trang PT, Berg M, Viet PH, Van Mui N, Van Der Meer JR.

Environ Sci Technol. 2005 Oct 1.

Ultrasensitive reporter protein detection in genetically engineered bacteria.

Wells M, Gösch M, Rigler R, Harms H, Lasser T, van der Meer JR.

Anal Chem. 2005 May 1. 10.1021/ac048127k

2004

Dynamics of multiple lin gene expression in Sphingomonas paucimobilis B90A in response to different hexachlorocyclohexane isomers.

Suar M, van der Meer JR, Lawlor K, Holliger C, Lal R.

Appl Environ Microbiol. 2004 Nov. 10.1128/AEM.70.11.6650-6656.2004

Design of new promoters and of a dual-bioreporter based on cross-activation by the two regulatory proteins XylR and HbpR.

Tropel D, Bähler A, Globig K, van der Meer JR.

Environ Microbiol. 2004 Nov. 10.1111/j.1462-2920.2004.00645.x

Genetic analysis of phenoxyalkanoic acid degradation in Sphingomonas herbicidovorans MH.

Müller TA, Byrde SM, Werlen C, van der Meer JR, Kohler HP.

Appl Environ Microbiol. 2004 Oct. 10.1128/AEM.70.10.6066-6075.2004

Illuminating the detection chain of bacterial bioreporters.

van der Meer JR, Tropel D, Jaspers M.

Environ Microbiol. 2004 Oct. 10.1111/j.1462-2920.2004.00655.x

Bacterial transcriptional regulators for degradation pathways of aromatic compounds.

Tropel D, van der Meer JR.

Microbiol Mol Biol Rev. 2004 Sep. 10.1128/MMBR.68.3.474-500.2004

Development of a Set of Simple Bacterial Biosensors for Quantitative and Rapid Measurements of Arsenite and Arsenate in Potable Water.

Stocker J, Balluch D, Gsell M, Feliciano J, Daunert S, Malik KA, van der Meer JR.

Environ Sci Technol. 2004 May 15. 10.1021/es040385b

Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: evidence for horizontal gene transfer.

Dogra C, Raina V, Pal R, Suar M, Lal S, Gartemann KH, Holliger C, van der Meer JR, Lal R.

J Bacteriol. 2004 Apr.

Mutation analysis of the different tfd genes for degradation of chloroaromatic compounds in Ralstonia eutropha JMP134.

Laemmli C, Werlen C, van der Meer JR.

Arch Microbiol. 2004 Feb. 10.1007/s00203-003-0634-4

2003

Development of a set of simple bacterial biosensors for quantitative and rapid measurements of arsenite and arsenate in potable water.

Stocker J, Balluch D, Gsell M, Harms H, Feliciano J, Daunert S, Malik KA, van der Meer JR.

Environ Sci Technol. 2003 Oct 15.

Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13.

Sentchilo V, Ravatn R, Werlen C, Zehnder AJ, van der Meer JR.

J Bacteriol. 2003 Aug.

Genomic islands and the evolution of catabolic pathways in bacteria.

van der Meer JR, Sentchilo V.

Curr Opin Biotechnol. 2003 Jun.

Community analysis of ammonia and nitrite oxidizers during start-up of nitritation reactors.

Egli K, Langer C, Siegrist HR, Zehnder AJ, Wagner M, van der Meer JR.

Appl Environ Microbiol. 2003 Jun.

Microbial composition and structure of a rotating biological contactor biofilm treating ammonium-rich wastewater without organic carbon.

Egli K, Bosshard F, Werlen C, Lais P, Siegrist H, Zehnder AJ, Van der Meer JR.

Microb Ecol. 2003 May. 10.1007/s00248-002-2037-5

2002

Cloning and characterization of lin genes responsible for the degradation of Hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90.

Kumari R, Subudhi S, Suar M, Dhingra G, Raina V, Dogra C, Lal S, van der Meer JR, Holliger C, Lal R.

Appl Environ Microbiol. 2002 Dec.

Community shifts in a seeded 3-chlorobenzoate degrading membrane biofilm reactor: indications for involvement of in situ horizontal transfer of the clc-element from inoculum to contaminant bacteria.

Springael D, Peys K, Ryngaert A, Van Roy S, Hooyberghs L, Ravatn R, Heyndrickx M, van der Meer JR, Vandecasteele C, Mergeay M, Diels L.

Environ Microbiol. 2002 Feb.

2001

Measuring mass transfer processes of octane with the help of an alkSalkB::gfp-tagged Escherichia coli.

Jaspers MC, Meier C, Zehnder AJ, Harms H, van der Meer JR.

Environ Microbiol. 2001 Aug.

Biotransformation of various substituted aromatic compounds to chiral dihydrodihydroxy derivatives.

Raschke H, Meier M, Burken JG, Hany R, Müller MD, Van Der Meer JR, Kohler HP.

Appl Environ Microbiol. 2001 Aug. 10.1128/AEM.67.8.3333-3339.2001

Enrichment and characterization of an anammox bacterium from a rotating biological contactor treating ammonium-rich leachate.

Egli K, Fanger U, Alvarez PJ, Siegrist H, van der Meer JR, Zehnder AJ.

Arch Microbiol. 2001 Mar.

2000

1999

Enrichment, phylogenetic analysis and detection of a bacterium that performs enhanced biological phosphate removal in activated sludge.

Hesselmann RP, Werlen C, Hahn D, van der Meer JR, Zehnder AJ.

Syst Appl Microbiol. 1999 Sep. 10.1016/S0723-2020(99)80055-1

Population dynamics of an introduced bacterium degrading chlorinated benzenes in a soil column and in sewage sludge.

Tchelet R, Meckenstock R, Steinle P, van der Meer JR.

Biodegradation. 1999 Apr.

1998

Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater

van der Meer JR, Werlen C, Nishino SF, Spain JC.

Appl Environ Microbiol. 1998 Nov.

1997

Inhibition of denitrification activity but not of mRNA induction in Paracoccus denitrificans by nitrite at a suboptimal pH.

Baumann B, van der Meer JR, Snozzi M, Zehnder AJ.

Antonie Van Leeuwenhoek. 1997 Oct.

Development and characterization of a whole-cell bioluminescent sensor for bioavailable middle-chain alkanes in contaminated groundwater samples.

Sticher P, Jaspers MC, Stemmler K, Harms H, Zehnder AJ, van der Meer JR.

Appl Environ Microbiol. 1997 Oct.

1996

1995

1994

Genetic adaptation of bacteria to chlorinated aromatic compounds.

van der Meer JR.

FEMS Microbiol Rev. 1994 Oct.

Influence of amino acid substitutions in the nisin leader peptide on biosynthesis and secretion of nisin by Lactococcus lactis.

van der Meer JR, Rollema HS, Siezen RJ, Beerthuyzen MM, Kuipers OP, de Vos WM.

J Biol Chem. 1994 Feb 4.

1993

1992

Molecular mechanisms of genetic adaptation to xenobiotic compounds.

van der Meer JR, de Vos WM, Harayama S, Zehnder AJ.

Microbiol Rev. 1992 Dec.

1991